Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKFLLKPKKSLGQNFILSSEITKRIVVLAGNLEDFNVIEIGPGYGALTKEILAHNPKSLLAIEKDSNL---VKCHDQLLNEHQGKFRIVEADALYVVEEELIER---PVKVIANLPYNISLALFLKWLNKIKLFTTFTLMFQKEVADRIIARPNSKDYGSLSVLSQLLCDIRREFDIEPKEFFPRPKVYSSVITVKPLPTQRFAV-NLEALTKLTRAVFAQRRKMLRNSLQNVTNRTETALENAKLSGNERPKNLTVEQFCLLANNM
1QYR Chain:A ((17-262))
-------------QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT-EPVGERLDQLTVIELDRDLAARLQTHPFL----GPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLF--SVEVLTGMGIDPAMRAENISVAQYCQMANYL
General information:
TITO was launched using:
RESULT:
Template:
1QYR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -161059 for 1922 contacts (-83.8/contact) +
2D Compatibility (PS) -25761 + (NN) -15103 + (LL) 1176
1D Compatibility (HY) -20000 + (ID) 4350
Total energy: -225097.0 ( -117.12 by residue)
QMean score : 0.433
(partial model without unconserved sides chains):
PDB file :
Tito_1QYR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QYR-query.scw
PDB file :
Tito_Scwrl_1QYR.pdb
: