Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNAKRKVVIYIKQYCPFCKRAKELLDEKGVKYEEIDVFKNSDLFSNIKLKYNV-RTVPQIFIADKNGNYVHHIAGCDKLMDLEREGKLDDMLSTNYDKTDVTTYTSNSDEYEEYVASHDDFM
3QMX Chain:A ((17-99))
------KIEIYTWSTCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARANGKRSLPQIFIDDQ------HIGGCDDIYALDGAGKLDPLLHS----------------------------
General information:
TITO was launched using:
RESULT:
Template:
3QMX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57965 for 559 contacts (-103.7/contact) +
2D Compatibility (PS) -8992 + (NN) -2454 + (LL) 1736
1D Compatibility (HY) -6400 + (ID) 1700
Total energy: -75775.0 ( -135.55 by residue)
QMean score : 0.786
(partial model without unconserved sides chains):
PDB file :
Tito_3QMX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QMX-query.scw
PDB file :
Tito_Scwrl_3QMX.pdb
: