Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMKKVKLGILISGRGSNMQALMKACQNYGFPAEMACVISNNNKAAGLKVAEQAGMPTFVVENK----PLDVDK-IHEILVQHEVNLVCLAGFMRILKADFLNKWHGKVINVHPSLLPSFKGLNAQEQALKAGVKVTGCTVHYVTSEVDAGAIIAQAAVPVLPNDDIHSLSKRILSEEHKCYVEAVRLIAMLSRKLERP
1RBM Chain:A ((2-185))
-----RVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVASGTVQLGEN
General information:
TITO was launched using:
RESULT:
Template:
1RBM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148317 for 1465 contacts (-101.2/contact) +
2D Compatibility (PS) -20104 + (NN) -14442 + (LL) 736
1D Compatibility (HY) -19200 + (ID) 4600
Total energy: -205927.0 ( -140.56 by residue)
QMean score : 0.597
(partial model without unconserved sides chains):
PDB file :
Tito_1RBM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RBM-query.scw
PDB file :
Tito_Scwrl_1RBM.pdb
: