Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMIFRLLFLLVFISVNSYAVIKQDLSNNHYIQKINEITSKELLLPLPDDKLLGDSKAPILMIEYASLTCYHCSLFHREVFPEIKKKYIDTGKMLYIFRHFPLDYRGLKAAMLSYCYEKQED---YFNFNKAVF----NSIDSWNYSN-LSDLTVLQKVAALSNLKQDTFNRCINDKEVMDKIINDKSLAINKLGIMATPIFFIKLNNDRSHTEPNKIRHEGYKAQEYFTNVIDRLYEKAIVK
3GH9 Chain:A ((9-169))
---------------------------------NDAVSGQPSIKGQP---VLGKDDAPVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNVMFHGKGSRLAALASEEVWKEDPDSFWDFHEKLFEKQPDTEQEWVTPGLLGDL-----AKSTTKIKPETLKENL-DKETFASQVEKDSDLNQKMNIQATPTIYVNDKVIKNFADYDEIKETIEKELKGK--------------
General information:
TITO was launched using:
RESULT:
Template:
3GH9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105631 for 1174 contacts (-90.0/contact) +
2D Compatibility (PS) -15613 + (NN) -1841 + (LL) 4284
1D Compatibility (HY) -6800 + (ID) 1950
Total energy: -127551.0 ( -108.65 by residue)
QMean score : 0.540
(partial model without unconserved sides chains):
PDB file :
Tito_3GH9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GH9-query.scw
PDB file :
Tito_Scwrl_3GH9.pdb
: