Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIGSPVILAPMSGVTDYPFRSIVKKLG-ASLLVSEMIASRAMIMQTR---------QSMQKAKVDELTAVQLAGCEPDIMAEAAKLNEDMGAKIIDINFGCPVKKVVNGYAGSALMRNEKKAAEIIEAVVKAV--NVPVTVKIRTGWNNENRNAPRLAKIAEDLGAKMITVHGRTRAQLYNGQA-DWKFIRNVKEQVKIPVIVNGDIKSLNDIQNALKESRADGVMIGRGAYGRPWLINQAINFLSGSEVSEPTASEKLSIILEHYDNILEYYGNDAGIKIAR--KHIGWYSSGFKNSSEFRVRVNNMTDSMEVKENIVSFFSQV |
| 4YCP Chain:A ((9-313)) | -----VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGAP-------GGGATLLKDPELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKF-EIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP-------NLSRVVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNSPDIARAIQAIDIEK |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YCP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -99519 for 2401 contacts (-41.4/contact) +
2D Compatibility (PS) -30533 + (NN) -9593 + (LL) 1308
1D Compatibility (HY) -16000 + (ID) 4100
Total energy: -158437.0 ( -65.99 by residue)
QMean score : 0.481
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