Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLAKGKEMGKLEGKIALIAGASGGMGSAVAKRFVREGAYVILISRSIDNLKQLYDEIEKLDEFKEGSVKLIQLDLLDF--ENVKILANMIESLKLSESGALDILVACTGILGKLNLVHDCELEELQNVMNTNFTANWYLLKNLDPVLKKSNSGRVIFMTSEVTLSPSSYPYWVPYAASKAALEIMVKIYASETKHTKLCVNAVYSEGPVDSEMYKQAFPGKDISELILPNKLTDKFVELASEDCSISGQVLPLSKSLE
3F1L Chain:A ((10-231))
-----------LNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHI---NEETGRQPQWFILDLLTCTSENCQQLAQRIA----VNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRA--NWGAYAASKFATEGMMQVLADEYQQ-RLRVNCI-NPGGTRTAMRASAFPTEDPQKLKTPADIMPLYLWLMGDDSRRKTGMTFDAQPG-
General information:
TITO was launched using:
RESULT:
Template:
3F1L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -152446 for 1801 contacts (-84.6/contact) +
2D Compatibility (PS) -24035 + (NN) -13321 + (LL) 1496
1D Compatibility (HY) -12800 + (ID) 3650
Total energy: -204756.0 ( -113.69 by residue)
QMean score : 0.564
(partial model without unconserved sides chains):
PDB file :
Tito_3F1L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F1L-query.scw
PDB file :
Tito_Scwrl_3F1L.pdb
: