Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKFVRLLSSILVALSVIFLGYCYFTKKGIFAPAVIHNAEVKIGGDFSLINQDGQVIRSNDFKDKYMMIFFGFSSCKKICPMNLGIISETLAKLDEKTSDKLQTFFITVDPECDSTEKLKEFQQQFDYRIQMLTGERKKIDEVIANYKVYTSKVGGEEGINHSSIIYLIGPGGKYVTHFAADLNSDESQS-DKIAAEIKKYINEL
2B7J Chain:A ((20-182))
------------------------------------------LGGPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVY---------VDHSIFFYLMDPEGQFVD--ALGRNYDEKTGVDKIVEHVKSYVPAE
General information:
TITO was launched using:
RESULT:
Template:
2B7J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72886 for 1135 contacts (-64.2/contact) +
2D Compatibility (PS) -16010 + (NN) -7996 + (LL) 4468
1D Compatibility (HY) -14000 + (ID) 2750
Total energy: -109174.0 ( -96.19 by residue)
QMean score : 0.617
(partial model without unconserved sides chains):
PDB file :
Tito_2B7J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2B7J-query.scw
PDB file :
Tito_Scwrl_2B7J.pdb
: