Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIFLDSVDLNEIEELKEF--IDGITTNPSLIAKSG-RKDKYEGLISEICSIVTGPVSVEVVASNHEDMVKEGLKLTKIASNIVVKLPLTYEGLISCKKLWTEHKIPANITLCFSPGQALLAAKAGACFISPFVGRLDDISYDGLLLIEDICTIYSNYGFDTKILVASVRSPTHVIEAARLGANSITVPAKVLRQLLNHPLTDRGLAIFEKDWSTKQ
3S1W Chain:A ((1-212))
MKIFLDTANIDEIRTGVNWGIVDGVTTNPTLISKEAVNGKKYGDIIREILKIVDGPVSVEVVSTKYEGMVEEARKIHGLGDNAVVAIPMTEDGLRAIKTLSSEH-INTNCTLVFNPIQALLAAKAGVTYVSPFVGRLDDIGEDGMQIIDMIRTIFNNYIIKTQILVASIRNPIHVLRSAVIGADVVTVPFNVLKSLMKHPKTDEGLAKFLEDWKKVS
General information:
TITO was launched using:
RESULT:
Template:
3S1W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -157141 for 1789 contacts (-87.8/contact) +
2D Compatibility (PS) -22519 + (NN) -3238 + (LL) 64
1D Compatibility (HY) -22800 + (ID) 5450
Total energy: -211084.0 ( -117.99 by residue)
QMean score : 0.582
(partial model without unconserved sides chains):
PDB file :
Tito_3S1W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3S1W-query.scw
PDB file :
Tito_Scwrl_3S1W.pdb
: