Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEFGNIKWFNAEKGYGFIKPEANGNDIFVHISTLERSGIRPDSLRGENKEKGIKGERVSYELKEERGRNGEGKKFAINLKLLED
3MEF Chain:A ((7-61))
---GIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYK--SLD--------EGQKVSFTI--ESGAKGPAAGNVTSL-----
General information:
TITO was launched using:
RESULT:
Template:
3MEF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12891 for 288 contacts (-44.8/contact) +
2D Compatibility (PS) -5972 + (NN) -1772 + (LL) 704
1D Compatibility (HY) -6400 + (ID) 1300
Total energy: -27631.0 ( -95.94 by residue)
QMean score : 0.516
(partial model without unconserved sides chains):
PDB file :
Tito_3MEF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MEF-query.scw
PDB file :
Tito_Scwrl_3MEF.pdb
: