Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKIATWNVNSIRKRVDQ-LCSFIVDDQIDIILLQEIKCTEEQFP------------YVEIEKLGYECIVYGEVARNGVCVLSKH-PILEKFKIDIVEGYQEARYIECLIKHNNQKMRVVSIYVPNGQSLGSHVFEYKLKFLDNLYERMDNLLKNEELIVIAGDYNVAPDEIDVFDPTLLNGQVCFHIKEREKL-KAILNLGFKDAFRMSHPNLQQFSWWRYQGNSLRNNQGMRIDHMLLSPQAVDKLGICYIDDRLRKLENPSDHTPIVSIMEW
4B5J Chain:A ((1-251))
MLKIISANVNGIRSAYKKGFYEYIAASGADIVCVQELKAQEADLSADMKNPHGMHGHWHCAEKRGY----------SGVAVYSKRKPDNVQIGMGIEEFDREGRFVRC----DFGRLSVISLYLPSGSSAEERQ-QVKYRFLDAFYPMLEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVIHKLGWTDMWRTLYPDVPGYTWWSNRGQAYAKDVGWRIDYQMVTPELAAKA----VSAHVYKDEKFSDHAPLVVEYDY
General information:
TITO was launched using:
RESULT:
Template:
4B5J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100725 for 1964 contacts (-51.3/contact) +
2D Compatibility (PS) -25011 + (NN) -11002 + (LL) 1816
1D Compatibility (HY) -15200 + (ID) 3850
Total energy: -153972.0 ( -78.40 by residue)
QMean score : 0.459
(partial model without unconserved sides chains):
PDB file :
Tito_4B5J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4B5J-query.scw
PDB file :
Tito_Scwrl_4B5J.pdb
: