Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQLNLFNNNQVDYSRQNYIILDENKHIYNAVINDLS-----WKYLFLFGPKGSGKTHLAH-------------IWQSINNAIFINV--------NNFISEIRYSNAFILEDVQDI----QDEATLLHCYNYMKENNKRLLITSSTSPKRLNFKLKDLSSRILSTISAKIPSASEELLRIMLIKRFSDKQLKVDLKVINYILARIERSFCSINRIIEKIDNGSMGSNVTIPFVSTLLKRDTT
1L8Q Chain:A ((8-195))
------------YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIELDNKTRFKIIK-EKLKEFNLELRKEVIDYLLENTKNVREIEGKIKLIKLKGFEGLERKERKERDKLMQIVE
General information:
TITO was launched using:
RESULT:
Template:
1L8Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91063 for 1157 contacts (-78.7/contact) +
2D Compatibility (PS) -16993 + (NN) -7859 + (LL) 932
1D Compatibility (HY) -12000 + (ID) 2050
Total energy: -129033.0 ( -111.52 by residue)
QMean score : 0.381
(partial model without unconserved sides chains):
PDB file :
Tito_1L8Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L8Q-query.scw
PDB file :
Tito_Scwrl_1L8Q.pdb
: