Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLPATPDNSTAVAIIPIAAILG-IIPIATSVAPIAPNN-NAKPIVHPPEKVLEGCCFCEEIMLVYYKTVARCFVFCANYYYFHHLQTFFEMELYYL
3AFO Chain:A ((234-283))
--LATPTGSTAYSLSAGGSIVSPLVP-AILMTPICPRSLSFRPLILPHSSHIRIKIGSKLNQKPVNSVVKLSVDGIPQQDLDVGDEIYVINEVGTI
General information:
TITO was launched using:
RESULT:
Template:
3AFO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6139 for 278 contacts (-22.1/contact) +
2D Compatibility (PS) -5010 + (NN) -3159 + (LL) 588
1D Compatibility (HY) -3200 + (ID) 700
Total energy: -17620.0 ( -63.38 by residue)
QMean score : 0.361
(partial model without unconserved sides chains):
PDB file :
Tito_3AFO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AFO-query.scw
PDB file :
Tito_Scwrl_3AFO.pdb
: