Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNINIKNLVHAFSKLPSLGPSSSRRLVIHLLQNKEKVMLPLASSIKELADLIIECKVCGNLDTQSPCSICTNPKRDTKLMCVVEELGDLWAFEKGSIYSGMYHVLGGRLSAINGIGPEKLNLDNIPKRVTEFKIEEVIIAINPTLEGQVTVQYIIESLKNLDVKVSRLACGIPMGGEIDYLDEGTLKAALTSRQEYESNIK
4O6O Chain:A ((18-211))
-STSVAKLIEELSKLPGIGPKTAQRLAFFIINMPLDEVRSLSQAIIEAKEKLRYGKICFNITDKEVCDICSDENRDHSTICVVSHPMDVVAMEKVKEYKGVYHVLHGVISPIEGVGPEDIRIKELLERVRDGSVKEVILATNPDIEGEATAMYIAKLLKPFGVKVTRIAHGIPVGGDLEYTDVVTLSKALEGRREV-----
General information:
TITO was launched using:
RESULT:
Template:
4O6O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124113 for 1263 contacts (-98.3/contact) +
2D Compatibility (PS) -21121 + (NN) -11525 + (LL) 500
1D Compatibility (HY) -15600 + (ID) 3650
Total energy: -175509.0 ( -138.96 by residue)
QMean score : 0.425
(partial model without unconserved sides chains):
PDB file :
Tito_4O6O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4O6O-query.scw
PDB file :
Tito_Scwrl_4O6O.pdb
: