Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKKDYYKLLGVDRNASTDEIKKAYKKLALKYHPDRNPGNKEAEEKFKEITAAYEVLSDSEKRAGYDRYGHEGASGGFDFSQGFGSAGDFSDIFNDFFGGEFGSSSRSKAKRSTTGVPGADLRYDLEITLEDAFKGIQAPIHYVTNVKCDMCQGRGSE-GATKPVQCHTCQGSG-RIRTQQGFFTIER---TCTTCYGEGEII--QNKCKKCNGSGRRRDEVNISVSIPKGIEEGAKVRVSGKGEAG-AKGGKSGDLYVYVKITPHKIFTRNKADLHCKVPIRMTLAVLGGEIDVQSIDGAKIKVKVPEGTQTSTKLR--CKEKGMPYMNSYARGDLYVQIIVETLNPNNLTKKQIELLKALEEEENASIQQQSEGFFSKVKKK |
| 1NLT Chain:A ((8-235)) | -------------------------------------------------------------------------------------------------------------------PQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVK--KCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQ--RIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIK--DPE----------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NLT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -67083 for 1421 contacts (-47.2/contact) +
2D Compatibility (PS) -23426 + (NN) -7036 + (LL) 7824
1D Compatibility (HY) -12800 + (ID) 3500
Total energy: -106021.0 ( -74.61 by residue)
QMean score : 0.414
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