Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPIICALDTQDLNEAISLANTLRDKVGMIKLGLEFFAAHGPSGVREVAKCNVPTFLDLKLHDIPNTVAKTVEAIKVLNIEILTLHISGGTKMLEEALSIV----KDTKTKLIGVTVLTSMSNEDLSELGIAREVKSQVILFAKLAKKVGLHGIVCSALEAQEVYQECGKDFKIITSGIRV-GFGHDDQKRTATPKEAINSGADYIVIGRPITKSNSPANSAELILKSLS
1JJK Chain:A ((15-241))
-SPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPL-LIAVTVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQ
General information:
TITO was launched using:
RESULT:
Template:
1JJK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -163171 for 1897 contacts (-86.0/contact) +
2D Compatibility (PS) -24229 + (NN) -10506 + (LL) 272
1D Compatibility (HY) -14800 + (ID) 4600
Total energy: -217034.0 ( -114.41 by residue)
QMean score : 0.529
(partial model without unconserved sides chains):
PDB file :
Tito_1JJK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JJK-query.scw
PDB file :
Tito_Scwrl_1JJK.pdb
: