Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLNLESLP----KHLAIIMDGNSRWANSQGRVKIDGYRKGSEVAYDIAKHCIALAIPYLTLYAFSMENWLRPKEETDCLFDLFYSILTDRDKVNFFHNYNIKLNFVGNLSLLPGKILNQIKESEEMTRKNDGLLLTVAVSYGAKQEIIHAVRNITRK------NIDCVSEDEFEKFLYTKDLPKLDLLIRTGGEKRLSNFLLWQAAYAELYFCDTLWPDFSCQDLSKALEDYTKREKRYGR
2E99 Chain:A ((14-240))
-------PAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDS--EVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRE-----
General information:
TITO was launched using:
RESULT:
Template:
2E99.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135101 for 1626 contacts (-83.1/contact) +
2D Compatibility (PS) -23046 + (NN) -3183 + (LL) 940
1D Compatibility (HY) -14000 + (ID) 4650
Total energy: -179040.0 ( -110.11 by residue)
QMean score : 0.507
(partial model without unconserved sides chains):
PDB file :
Tito_2E99.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2E99-query.scw
PDB file :
Tito_Scwrl_2E99.pdb
: