Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGGYITMETLNSINIPKRKEDSHKGDYGKILLIGGSANLGGAIMLAARACVFSGSGLITVATHPTNHSALHSRCPEAMVIDINDTK------MLTKMIEMT---DSILIGPGLGVDFKGNNAITFLLQNIQPHQNLIVDGDAITIFSKLKPQLPTCRVIFTPHLKEWERLSGIPIEE--QTYERNREAVDRLGATVVLKKHGTEIFFKDEDFKLTIGSPAMATGGMGDTLAGMITSFVGQFDNLKEAVMSATYTHSFIGENLAKDMYVVPPSRLINEIPYAMKQLES
3RSF Chain:A ((223-501))
----ITREMVRSL-LPERPRDSHKGTYGKVLIIAGSRLYSGAPVLSGMGSLKVGTGLVKLAVPFPQNLIATSRFPELISVPIDTEKGFFSLQNLQECLELSKDVDVVAIGPGLGNNEHVREFVNEFLKTLE--KPAVIDADAINVLDTSVLKERKSPAVLTPHPGEMARLVKKTVGDVKYNYELAEEFAKENDCVLVLKSATTIVTDGEKTLFNITGNTGLSKGGSGDVLTGMIAGFIAQGLSPLEASTVSVYLHGFAAELFEQDERGLTASELLRLIPEAIRRLK-
General information:
TITO was launched using:
RESULT:
Template:
3RSF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -198019 for 2475 contacts (-80.0/contact) +
2D Compatibility (PS) -28945 + (NN) -10637 + (LL) -248
1D Compatibility (HY) -11200 + (ID) 4100
Total energy: -253149.0 ( -102.28 by residue)
QMean score : 0.551
(partial model without unconserved sides chains):
PDB file :
Tito_3RSF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RSF-query.scw
PDB file :
Tito_Scwrl_3RSF.pdb
: