Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLQSIPALPVGDIKKSIGFYCDKLGFTLVHHEDGFAVLMCNEVRIHLWEASDEGWRSRSNDSPVCTGAESFIAGTASCRIEVEGIDELYQHIKPLGILHPNTSLKD------QWWDERDFAVIDPDNNLISFFQQIKS
1NIQ Chain:B ((4-118))
--QATPNLPSRDFDSTAAFY-ERLGFGIVFRDAGWMILQRGDLMLEFF--------AHPGLDP--------LASWFSCCLRLDDLAEFYRQCKSVGIQETSSGYPRIHAPELQEWGGTMAALVDPDGTLLRLIQ----
General information:
TITO was launched using:
RESULT:
Template:
1NIQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60606 for 708 contacts (-85.6/contact) +
2D Compatibility (PS) -11682 + (NN) -1231 + (LL) 1612
1D Compatibility (HY) -10000 + (ID) 1500
Total energy: -83407.0 ( -117.81 by residue)
QMean score : 0.333
(partial model without unconserved sides chains):
PDB file :
Tito_1NIQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NIQ-query.scw
PDB file :
Tito_Scwrl_1NIQ.pdb
: