Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNYDKKMINRINRIQGQLNGIIKMMEEGKDCKDVITQISASKSSLQRLMGIIISENLIECVKVAADDEESSQEL-----INEAVNLLVKSK
2DDO Chain:A ((168-223))
---------------------------GKNCRDLDSAIAAAKS--------LLSDTLKWVVVTS--------EMQVVVVTADSVNVISHSR
General information:
TITO was launched using:
RESULT:
Template:
2DDO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4400 for 187 contacts (-23.5/contact) +
2D Compatibility (PS) -4634 + (NN) 543 + (LL) 3268
1D Compatibility (HY) -2800 + (ID) 750
Total energy: -8773.0 ( -46.91 by residue)
QMean score : 0.127
(partial model without unconserved sides chains):
PDB file :
Tito_2DDO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DDO-query.scw
PDB file :
Tito_Scwrl_2DDO.pdb
: