Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNDMLISLVIPVFALLVIGGIIWVIIEGIVHISKKNKAIDNFLNQVNKVSETYKFATAFLFLILATAGISQFYLYYIVSAFLFWLVILTFGIAGIIFL--MPYGLCFLPLYKQKKKKQTFKKYMVYTTIGLSICLGLSLVLVHTTKIYMDEGGVRYYYGSFVMKQAGGYAYLALAVLSTLLIVAKKATNKNKEIETVDNTNITER |
2KNC Chain:A ((966-1000)) | ----------------------------------------------------------------------------------IWWVLVGV-LGGLLLLTILVLAMWKVGFFKRNRPPL--------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2KNC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -12447 for 124 contacts (-100.4/contact) +
2D Compatibility (PS) -3296 + (NN) -1336 + (LL) 15184
1D Compatibility (HY) -7200 + (ID) 250
Total energy: -9345.0 ( -75.36 by residue)
QMean score : 0.425
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