Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIKRVNKLVLGISFLFLIISIFAGCGTGKEAEIKKSFEKTLSMYPIKNLEDLYDKEGYRDDQFDKNDKGTWIVRSSMSIQSNGKDMNIKGMVLYMNRNTRTTNGYYYVDVIEREDKGIHRDNEKRYPVKMVDNKIIPTKEIKDEKIKKEIENFKFFVQYGDFKDLSKYKDGDISYNPEVPSYSAKYQLTNDDYNVKQLRKRYNIPTNKAPKLLLKGTGNLKGSSIGYKKIEFTFVEKKGENIYFSDGLHFNPSEDK |
| 2VDG Chain:A ((280-314)) | --------------------------------------------------------------------------------------------------------------------------------------VIP-KSSKDERIKENIQVFGWEIPEEDFKVLCSIKD-------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VDG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 5501 for 133 contacts (41.4/contact) +
2D Compatibility (PS) -3392 + (NN) 1508 + (LL) 11336
1D Compatibility (HY) -2800 + (ID) 800
Total energy: 11353.0 ( 85.36 by residue)
QMean score : 0.172
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