Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKIRSFTILSLLIYLAMMCYTVVTYSKLPTKVPIHYNLAGDADNFADKWVLLLINSAFIVIWLIFFIAGRYYERFAKWSHYNHTPREIRAIKLFLSTLNLEIMSYMSIFTVLEIWQIQHHHQLNLLWFNMIFIIIIGLTLVIFCLLPTIHKMRDSQ
1KF6 Chain:C ((69-111))
-------VIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKS-----------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1KF6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7822 for 189 contacts (-41.4/contact) +
2D Compatibility (PS) -4602 + (NN) -3444 + (LL) 12396
1D Compatibility (HY) 400 + (ID) 350
Total energy: -3422.0 ( -18.11 by residue)
QMean score : -0.263
(partial model without unconserved sides chains):
PDB file :
Tito_1KF6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KF6-query.scw
PDB file :
Tito_Scwrl_1KF6.pdb
: