Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEKLKLMTIVGTRPEIIRLSSTIKAC--DQYFNQILVHTGQNYDYTLNQIF--FD-----DLELRQPDHYLEAVGSNLGETMGNIIAKTYDVLLREQPDALLILGDTNSCLAAVSAKRL-KIPVFHMEAGNRCFD--QNVPEEINRKIVDHVSDVNLPYTEHSRRYLLDEGFNKANIFVTGSPMTEVIEAHRDKINHSDVL------NKLGLEP-QQYILVSAHREENIDNEKNFKSLMNAINDIAKKYK-MPVIYSTHPRSWKKIEESKFEFDPLVKQ---LKPFGFFDYNALQKDAFVVLSDSGTLSEESSILKFPGVLIRTSTERPEVLDKGTVIVGGITYNNLIQSVELAREMQNNNEPMIDAIDYKDTNVSTKVVKIIQSYKDIINRNTWRK |
| 1VGV Chain:A ((2-345)) | ----KVLTVFGTRPEAIKMAPLVHALAKDPFFEAKVCVTAQHRE-MLDQVLKLFSIVPDYDLNIMQP-------GQGLTEITCRILEGLKPILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGLRTGDLYSPWPEEANRTLTGHLAMYHFSPTETSRQNLLRENVADSRIFITGNTVIDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESFG--RGFEEICHALADIATTHQDIQIVYPVHLNP--NVREPVNRILGHVKNVILIDPQEYLPFVWLMNHAWLILTDSGGIQEEAPSLGKPVLVMRDTTERPEAVTAGTVRLVGTDKQRIVE--EVTRLLKDENE----------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VGV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -112287 for 2535 contacts (-44.3/contact) +
2D Compatibility (PS) -34959 + (NN) -14318 + (LL) 4276
1D Compatibility (HY) -22400 + (ID) 5400
Total energy: -185088.0 ( -73.01 by residue)
QMean score : 0.417
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