Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTKRQMGIFIYAGIIGGLLSGIVKLGWEVMFPPRTPERNATNPPQELLQQLGFSSEFTHQTYTFSNMELPWVSFIVHFSFSIVIAIIYCILVKKYAYLAIGQGAVFGIAIWVLFHLIIMPIMHTVPAVWDQPYQEHLSEFFGHIVWMMTIELVRQHFVYRYKLN |
1IIJ Chain:A ((6-21)) | ------PVTFIIATVVGVLLFL---------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1IIJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -5807 for 54 contacts (-107.5/contact) +
2D Compatibility (PS) -1659 + (NN) 469 + (LL) 13772
1D Compatibility (HY) -2000 + (ID) 100
Total energy: 4675.0 ( 86.57 by residue)
QMean score : -0.403
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