Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRRKRKWLIVICVLLVLITISQILKHFNYGTESKEAYNTYTVEK---ERQLDLQGKAYPR--EVKTYYKNNQVGTYLGVQ-VADGQTVKKGDMLINYKINSNKRQQLVDKINDTQHIITE---VYLNITKGLNNREIQKKLIEYKQTLYEAQQQLYQYDSQ-NRDSMYASFDGKIMIKNIDN---DSDNQPILYLISK-ESHIKTSVTEFDLNKVKKGDKVNLSITST-GKTGAGIIKQISELPISYEENLSLHENDALHLPESNNDGELANSKSISASPIFKSNNNSELSKYGVIID--DLSLPIRAGYSLEIKVPLN---AIKIPKSVLTKG---NNVFIVNKNSIVEKRNIRIKRIN-GDIIVEKGLKPGDKLIKQPKSTMNDGDKVEISS |
| 3NE5 Chain:B ((93-393)) | -----------------------------------GVKTATVTRGPLTFAQSFPANVSYNEYQYAIVQ-ARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEA--QSEYLLLRETGGTATQTEGILERLR-------LAGMPEADIR----RLIATQKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMDPVWVTAAIPESIAWLVKDASQFTLTVPARPDKTLTIRKWTLLPGVDAA------------------------------------------TRTLQLRLEVDNADEALKPGMNAWLQLNTASEPMLLIPSQALIDTGSEQRVITVDADGRFVPKRVAVFQASQGVTALRSGLAEGEKVVSSGLFLIDSEANISG-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NE5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -19833 for 1910 contacts (-10.4/contact) +
2D Compatibility (PS) -29330 + (NN) -3361 + (LL) 6292
1D Compatibility (HY) -3200 + (ID) 1700
Total energy: -51132.0 ( -26.77 by residue)
QMean score : 0.277
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