Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKLHKKIAWTGIKGSAITTFITALYNGSSVWNALAVAGIAFGGGAGTAVAALGRATVMRFIKRWGVRKTAAW
1AFO Chain:A ((72-90))
-----------------------------------EITLIIFGVMAGVIGTILL-------------------
General information:
TITO was launched using:
RESULT:
Template:
1AFO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2381 for 66 contacts (-36.1/contact) +
2D Compatibility (PS) -1799 + (NN) 1333 + (LL) 4912
1D Compatibility (HY) -1200 + (ID) 300
Total energy: 565.0 ( 8.56 by residue)
QMean score : -0.560
(partial model without unconserved sides chains):
PDB file :
Tito_1AFO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFO-query.scw
PDB file :
Tito_Scwrl_1AFO.pdb
: