Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKVLYITAH--PFNELVSNSMAAGKAFIETYQQQHPDDEVKHIDLFETYIPVIDKDVLTGWGKMSNGETLTDDEQMKVSRLSDILEEFLSADKYVFVTPMWNLSFPPVVKAYIDAISIAGKTFKYSAEGPQGLLTDKKVLHIQSRGGYYTEGPAADFEMGDRYLRTIMTFLGVPSYETIIIEGHNAEPHKTEEIKATSINNAEKLATTF
3P0R Chain:A ((6-211))
--KVLFVKANNRPAEQAVSVKLY--EAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFDLTEEEAKAVAVADKYLNQFLEADKVVFGFPLWNLTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKIALLNARGGVYSEGPAAEVEMAVKYVASMMGFFGATNMETVVIEGHNQFPDKAEEIITAGLEEAAKVANKF
General information:
TITO was launched using:
RESULT:
Template:
3P0R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108151 for 1604 contacts (-67.4/contact) +
2D Compatibility (PS) -22407 + (NN) -11597 + (LL) 324
1D Compatibility (HY) -19600 + (ID) 4400
Total energy: -165831.0 ( -103.39 by residue)
QMean score : 0.552
(partial model without unconserved sides chains):
PDB file :
Tito_3P0R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3P0R-query.scw
PDB file :
Tito_Scwrl_3P0R.pdb
: