Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNYGIPQNAIITIAGTVGVGKSTLTQAL--------------ADKLNFKTSFENVEH--NPYLDKFYSDFERWSFHLQIYFLAERFKEQKRMFEYGGGFVQD---------RSIYEDVDIFAKMHEEEGTMSKEDFKTYSDLFNAMVMTPYFPKP---DVMIYLECNYDEVIDRIIERGREMEINTDPEYWKKLFKRYDDWI---------NSFNACPVVRININEYDIHKDPESLNPMIDKIARIIQTYRQVDTR
3IPY Chain:A ((5-240))
-----------ISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCN----------NGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASL---NGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWM--NNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNE-DFKDKYESL---VEKVKEFLST-------
General information:
TITO was launched using:
RESULT:
Template:
3IPY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90522 for 1272 contacts (-71.2/contact) +
2D Compatibility (PS) -19791 + (NN) -5054 + (LL) 2220
1D Compatibility (HY) -14400 + (ID) 3000
Total energy: -130547.0 ( -102.63 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_3IPY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IPY-query.scw
PDB file :
Tito_Scwrl_3IPY.pdb
: