Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIIYFSFTGNVRRFIKRTELENTLEITAENCMEPVHEPFIIVTGTIGFGEVPEPVQSFLEVNHQYIRGVAASGNRNWGLNFAKAGRTISEEYNVPLLMKFELHGKNKDVIEFKNKVGNFNENHGREKVQSY
2XOD Chain:A ((1-113))
MLVAYDSMTGNVKRFIHKLNMP-AVQIGEDLVID---EDFILITYTTGFGNVPERVLEFLERNNEKLKGVSASGNRNWGDMFGASADKISAKYEVPIVSKFELSGTNNDVEYFKERV---------------
General information:
TITO was launched using:
RESULT:
Template:
2XOD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76785 for 903 contacts (-85.0/contact) +
2D Compatibility (PS) -11915 + (NN) -650 + (LL) 356
1D Compatibility (HY) -10800 + (ID) 2700
Total energy: -102494.0 ( -113.50 by residue)
QMean score : 0.559
(partial model without unconserved sides chains):
PDB file :
Tito_2XOD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2XOD-query.scw
PDB file :
Tito_Scwrl_2XOD.pdb
: