Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK
3V5I Chain:A ((4-193))
---IPTVIE------RAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAAAMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE--
General information:
TITO was launched using:
RESULT:
Template:
3V5I.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118670 for 1391 contacts (-85.3/contact) +
2D Compatibility (PS) -19957 + (NN) -7033 + (LL) 476
1D Compatibility (HY) -25200 + (ID) 9150
Total energy: -179534.0 ( -129.07 by residue)
QMean score : 0.602
(partial model without unconserved sides chains):
PDB file :
Tito_3V5I.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3V5I-query.scw
PDB file :
Tito_Scwrl_3V5I.pdb
: