Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYLLSAGICMAIVSILLIGMAISNVSKGQYAKRFFFFATSCLVLTLVVVSSLSSSANASQTDNGVNRSGSEDPTVYSATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENANKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADSGQ
1SNC Chain:A ((7-141))
-------------------------------------------------------------------------------------LHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQHLRKSEAQAKKEKLNIWS--------
General information:
TITO was launched using:
RESULT:
Template:
1SNC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47679 for 1074 contacts (-44.4/contact) +
2D Compatibility (PS) -14388 + (NN) -3438 + (LL) 5968
1D Compatibility (HY) -15600 + (ID) 6650
Total energy: -81787.0 ( -76.15 by residue)
QMean score : 0.589
(partial model without unconserved sides chains):
PDB file :
Tito_1SNC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SNC-query.scw
PDB file :
Tito_Scwrl_1SNC.pdb
: