Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMVASLTTLPVIGVPIETKSLKGIDSLLSIVQMPGGIPVATTAIGAAGAKNAGILAARMLSIQNPSLVEKLNQYESSLIQKVEDMQNELQ
1O4V Chain:A ((15-171))
-RVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGMVASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAIN--NAKNAGILAASILGIKYPEIARKVKEYKERMKREVLEKAQRLE
General information:
TITO was launched using:
RESULT:
Template:
1O4V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125892 for 1279 contacts (-98.4/contact) +
2D Compatibility (PS) -17176 + (NN) -6483 + (LL) 496
1D Compatibility (HY) -18000 + (ID) 4400
Total energy: -171455.0 ( -134.05 by residue)
QMean score : 0.624
(partial model without unconserved sides chains):
PDB file :
Tito_1O4V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1O4V-query.scw
PDB file :
Tito_Scwrl_1O4V.pdb
: