Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRMKRFLTIVQILLVVIIIIFGYKIVQT----YIEDKQERANYEKLQQKFQMLMSKHQEHVRPQFESLEKINKDIVGWIKLSGTSLNYPVLQGKTNHDYLNLDFEREHRRKGSIFMDFRNELKNLNHNTILYGHHVGDNTMFDVLEDYLKQSFYEKHKIIEFDNKYGKYQLQVFSAYKTTTKDNYIRTDFENDQDYQQFLDETKRKSVINSDVNVTVKDKIMTLSTCEDAYSETTKRIVVVAKIIKVS
1RZ2 Chain:A ((35-252))
----------------------------IFMDYYENRKVMAEAQNIYEKSPMEEQSQDGEVRKQFKALQQINQEIVGWITMDDTQINYPIVQAKDNDYYLFRNYKGEDMRAGSIFMDYRNDVKSQNRNTILYGHRMKDGSMFGSLKKMLDEEFFMSHRKLYYDTLFEGYDLEVFSVYTTTTDFYYIETDFSSDTEYTSFLEKIQEKSLYKTDTTVTAGDQIVTLSTCD------AGRLVVHAKLVK--
General information:
TITO was launched using:
RESULT:
Template:
1RZ2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57248 for 1639 contacts (-34.9/contact) +
2D Compatibility (PS) -22058 + (NN) -4997 + (LL) 4448
1D Compatibility (HY) -20400 + (ID) 4450
Total energy: -104705.0 ( -63.88 by residue)
QMean score : 0.672
(partial model without unconserved sides chains):
PDB file :
Tito_1RZ2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RZ2-query.scw
PDB file :
Tito_Scwrl_1RZ2.pdb
: