Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKPIGVIDSGVGGLTVAKEIMRQLPNETIYYLGDIGRCPYGPRPGEQVKQYTVEIARKLMEFDIKMLVIACNTATAVALEYLQKTLSIPVIGVIEPGARTAIMTTRNQNVLVLGTEGTIKSEAYRTHIKRINPHVEVHGVACPGFVPLVEQMRYSDPTITSIVIHQTLKRWRNSESDTVILGCTHYPLLYKPIYDYFGGKKTVISSGLETAREVSALLTFSNEHASYTEHPDHRFFATGDPTHITNIIKEWLNLSVNVERISVND
3ISV Chain:A ((6-256))
--QAIGFIDSGVGGLTVVREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAKFTWEMTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIGVIQPGSRAALKATRNNKIGVLGTLGTVESMAYPTALKGLNRRVEVDSLACPKFVSVVESGEYKS-AIAKKVVAESLLPLKSTKIDTVILGCTHYPLLKPIIENFMGDGVAVINSGEETASEVSALLDYHNLLDATDEE-EHRFFTTGSTQIFKDIAKDWLN------------
General information:
TITO was launched using:
RESULT:
Template:
3ISV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -226016 for 2271 contacts (-99.5/contact) +
2D Compatibility (PS) -26947 + (NN) -7492 + (LL) 716
1D Compatibility (HY) -26400 + (ID) 6550
Total energy: -292689.0 ( -128.88 by residue)
QMean score : 0.608
(partial model without unconserved sides chains):
PDB file :
Tito_3ISV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ISV-query.scw
PDB file :
Tito_Scwrl_3ISV.pdb
: