Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKKKIPMRKCILSNEMHPK-KDMIRVVVNKEGEIFADVTGKKQGRGAYVSKDVA--MVEKAQQKEILEKYFKASKEQL--------DPVYKEIIRLIYREEIPK
2QQ4 Chain:A ((32-120))
-------------AGGMNPSCGDQVEVMVLLEGDTIADI--RFQGQGCAISTASASLMTEAVKGKKVAEALELSRKFQAMVVEGAPPDPTLGDLLALQGVAKLP-
General information:
TITO was launched using:
RESULT:
Template:
2QQ4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 16353 for 447 contacts (36.6/contact) +
2D Compatibility (PS) -7963 + (NN) -1784 + (LL) 1280
1D Compatibility (HY) -2000 + (ID) 1200
Total energy: 4686.0 ( 10.48 by residue)
QMean score : 0.354
(partial model without unconserved sides chains):
PDB file :
Tito_2QQ4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QQ4-query.scw
PDB file :
Tito_Scwrl_2QQ4.pdb
: