Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNYSFYQFVMTVRGRHDDKGRLA--EEIFDDLAFPKHDDDFNILSDYIETHGDFTLPMSVFDDLYEEYTEWLKF
3R1M Chain:A ((302-343))
--------------------GRLVGPTDLFDDPAFDETRRLANIVADYMRRHGPF--------------------
General information:
TITO was launched using:
RESULT:
Template:
3R1M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1286 for 111 contacts (-11.6/contact) +
2D Compatibility (PS) -3222 + (NN) 1340 + (LL) 3052
1D Compatibility (HY) -2800 + (ID) 750
Total energy: -3666.0 ( -33.03 by residue)
QMean score : 0.322
(partial model without unconserved sides chains):
PDB file :
Tito_3R1M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R1M-query.scw
PDB file :
Tito_Scwrl_3R1M.pdb
: