Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKYTIVDMDTCIACGACGAAAPDIYDYDDEGIAFVILDDNQGTAEVP--EELYEDMEDAIDGCPTDSIKIADESFDGDALKFE
4DHV Chain:B ((6-63))
------VDQDTCIGCAICA-LCPDVFEMNDEGKA-------QPKVEVIEDEELYNCAKEAMEACPVSAITI-------------
General information:
TITO was launched using:
RESULT:
Template:
4DHV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31098 for 363 contacts (-85.7/contact) +
2D Compatibility (PS) -5905 + (NN) -4836 + (LL) 1952
1D Compatibility (HY) -4800 + (ID) 1300
Total energy: -45987.0 ( -126.69 by residue)
QMean score : 0.566
(partial model without unconserved sides chains):
PDB file :
Tito_4DHV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DHV-query.scw
PDB file :
Tito_Scwrl_4DHV.pdb
: