Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKATTIIGIAGGSGSGKTTVTNEIMKNLEGHSVALLAQDYYYK----DQKHLTFDERLETNYDHPFAFDNDLLIENLKDLKNGKAVEVPTYDYASHTRSDITIDFKPKDVIIVEGIFALENKVLRDMMDVKIYVDTDADLRILRRLTRDTKERGRSMDSVINQYLSVVRPMHDQFIEPTKKYADIIIPEGGSNKVAIDIMTTKIQSLVSKQ
1UDW Chain:A ((24-232))
-----LIGVSGGTASGKSSVCAKIVQLL-QKQVVILSQDSFYRVLTSEQKAKALKGQF--NFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDILN--
General information:
TITO was launched using:
RESULT:
Template:
1UDW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83515 for 1540 contacts (-54.2/contact) +
2D Compatibility (PS) -21177 + (NN) -8447 + (LL) 964
1D Compatibility (HY) -22000 + (ID) 4250
Total energy: -138425.0 ( -89.89 by residue)
QMean score : 0.510
(partial model without unconserved sides chains):
PDB file :
Tito_1UDW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UDW-query.scw
PDB file :
Tito_Scwrl_1UDW.pdb
: