Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTIKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMDGVEATTQIKKDLPQIKVLMLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ
4YN8 Chain:A ((5-203))
-SIRVMLIDDHPVVRAGLRSILDSFDDITVVAEASDGSNINTKGI----DVVVTDIQMPGTDGITLTRALA-NAGGPPVLILTTYDTEADILAAVEAGAMGYLLKDAPESALHDAVVATFEGRRTLAPEVANALMQRVSKP---RQALSAREIEILQNLEQGLSNRQLAAKLFISEATVKTHLVHIYSKLGVDNRTAAITAARQQRLI-
General information:
TITO was launched using:
RESULT:
Template:
4YN8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110205 for 1523 contacts (-72.4/contact) +
2D Compatibility (PS) -21030 + (NN) -6566 + (LL) 1020
1D Compatibility (HY) -13600 + (ID) 3550
Total energy: -153931.0 ( -101.07 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_4YN8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YN8-query.scw
PDB file :
Tito_Scwrl_4YN8.pdb
: