Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLDKNQLAKYKQDHLCEYEKIMSNNEKEALEEKVASLDLDFIAKLYN------DLYINKKTIDDVSAVSEVKYDIKSQMSDDEIKRLEEQGLQAIKEGQFAVLLMAGGQGTRLGYKGPKGSFEI---EGVSLFELQA------NQLKTLNHQSGHTIQWYIMTSDINHEETLAYFEAHSYFGYDQEAIHFFKQDNIVALSEEGKLILNQQGRIMETPNGNGGVFKSLDKAGYLEEMSNNGVKYIFLNNIDNVLVKVLDPLFAGFTVEHDYDITSKTIQ-PKPGESVGRLVNVDCKDTVLEYSELDPEVANQ--------FNNANIGIHAFKLGFILNAVN---RELPYHLAIKNLKQLDEN--FGVIEQPT-LKFELFYFDIFTYGTSFVTLQVPREEEFSPLKNKE--GKDSVATATEDLRRMGLI |
1VM8 Chain:A ((19-464)) | ---KQRLSQAGQEHLLQFWNELSEAQQMELYMELQAMNFEELNSFFRKAIGEFDRSSHQEKVDARMEPVPRQVLGSATRDQEQLQAWESEGLSQISQNKVAVLLLAGGQGTRLGVSYPKGMYDVGLPSHKTLFQIQAERILKLQQLAEKHHGNKCTIPWYIMTSGRTMESTKEFFTKHKFFGLKKENVVFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGICSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYSEISLATAQRRSSDGRLLFNAGNIANHFFTVPFLKDVVNVYEPQLQHHVAQKKIPYVDSQGYFIKPDKPNGIKMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQGKDNPTTARHALMSL--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VM8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -121235 for 3068 contacts (-39.5/contact) +
2D Compatibility (PS) -42378 + (NN) -19656 + (LL) 516
1D Compatibility (HY) -29200 + (ID) 6800
Total energy: -218753.0 ( -71.30 by residue)
QMean score : 0.459
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