Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVLYFAEIKDILQKAQEDIV--------LEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKSDFIQPNDTVALIPPVSGG
1JWB Chain:D ((2-81))
IKVLFFAQVRELVGTDATEVAADFPTVEALRQHMAAQS------DRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFPPVTGG
General information:
TITO was launched using:
RESULT:
Template:
1JWB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40196 for 439 contacts (-91.6/contact) +
2D Compatibility (PS) -7805 + (NN) -2630 + (LL) 644
1D Compatibility (HY) -7200 + (ID) 1100
Total energy: -58287.0 ( -132.77 by residue)
QMean score : 0.578
(partial model without unconserved sides chains):
PDB file :
Tito_1JWB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JWB-query.scw
PDB file :
Tito_Scwrl_1JWB.pdb
: