Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKLLLPLIIMLLVLAACGNQGEKNNKAETKSYKMDDGKTVD-----IPKDPKRIAVVAPTYAGGLKKLGAN--IVAVNQQVDQ---SKVLKDKFKGVTKIGDGDVEKVAKEKPDLIIVYSTDKD-IKKYQKVAPTVVVDYNKHKYLEQ----QEMLGKIVGKEDKVKAWKKDWEETTAKDGKEIKKAIGQDATVSLFDEFDKKLYTYGDNWGRGGEVLYQAFGLKMQPEQQKLTAKAGWAEVKQEEIEKYAGDYIVSTSEGKPTPGYEST------NMWKNLKATKEGHIVKVDAGTYWYNDPYTLDFMRKDLKEKLIKAAK |
| 3GFV Chain:A ((14-275)) | -------------------------------KEQITVKHQLDKNGTKVPKNPKKVVVFDFGSLDTLDKLGLDDIVAGLPKQVLPKYLSKFKDDKYADVGSLKEPDFDKVAELDPDLIIISARQSESYKEFSKIAPTIYLGVDTAKYMESFKSDAETIGKIFDKEDKVKDELANIDHSIA-DVKKTAEKLNKNGLVIMAN--DGKISAFGPKSRYG--LIHDVFG--VAPADQNIKASTHGQSVSYEYISKTNPDYLFVIDRGTAIGETSSTKQVVENDYVKNVNAVKNGHVIYLDSAT-WY---------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GFV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -45231 for 1844 contacts (-24.5/contact) +
2D Compatibility (PS) -26326 + (NN) -15415 + (LL) 4856
1D Compatibility (HY) -17200 + (ID) 3800
Total energy: -103116.0 ( -55.92 by residue)
QMean score : 0.355
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