Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDVKALKLMTLNDVLSQINGDMTLGIGTGSTMELLLPQMAQLIKERGY-NITGVCTSNKIAFLAKELGIKICEINDVDHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDEMASRFVVVVDETKIVQYLGETFKLPVEVDKFNWYHILRKIESYADIKVERRVNEDVAFITDNGNYILDCKLPKGIDPYKFHEYLIHLTGVFETGYFLDMADQVIVGTQEGVKILEK
1UJ5 Chain:A ((3-225))
-RPLESYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEELAKREGIPLVDLPP-EGVDLAIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIADHTKKVPVLGRG-PVPVEIVPFGYRATLKAIADLGG-EPELRMDGDEFYFTDGGHLIADCRFGPIGDPLGLHRALLEIPGVVETGLFVGMATRALVAGPFGVEEL--
General information:
TITO was launched using:
RESULT:
Template:
1UJ5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134855 for 1969 contacts (-68.5/contact) +
2D Compatibility (PS) -24605 + (NN) -12145 + (LL) 904
1D Compatibility (HY) -18400 + (ID) 4000
Total energy: -193101.0 ( -98.07 by residue)
QMean score : 0.504
(partial model without unconserved sides chains):
PDB file :
Tito_1UJ5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UJ5-query.scw
PDB file :
Tito_Scwrl_1UJ5.pdb
: