Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKKLLTLFIVSMLILTACGKKESATTSSKNGKPLVVI-YGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVNLAFLGKDSIVGSRASHAVLMYAPKSFLDFQKQLFAAQQDENKEWLTKELLDKHIKQLHLDKETENKIIKDYKTKDSKSWKAAEKDKKIAKDNHIKTTPTAFINGEKVEDPYDY----ESYEKLLKDKIK
3GH9 Chain:A ((25-194))
----------------------------GKDDAPVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNVMFHGKGSRLAALASEEVWKEDPDSFWDFHEKLFEKQPDTEQEWVTPGLLGDLAKSTTKIKPETLKENLDKETFASQ----VEKDSDLNQKMNIQATPTIYVNDKVIKNFADYDEIKETIEKELKGK--
General information:
TITO was launched using:
RESULT:
Template:
3GH9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12401 for 1265 contacts (-9.8/contact) +
2D Compatibility (PS) -18012 + (NN) -11601 + (LL) 3340
1D Compatibility (HY) -10000 + (ID) 3150
Total energy: -51824.0 ( -40.97 by residue)
QMean score : 0.508
(partial model without unconserved sides chains):
PDB file :
Tito_3GH9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GH9-query.scw
PDB file :
Tito_Scwrl_3GH9.pdb
: