Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVLTDKIAVVTGAGSGIGEAIATLLHEEGAKVVLAGRNKDKLQNVANQL--AQDSVKVVPTDVTNKEEVDELMKIAQQTFGGLDIVINSAGQMLSSKITDYQVDEWDSMIDVNIKGTLYTAQAALPTMLEQSSGHLINIASISGFEVTKSSTIYSATKAAVHTITQGLEKELAKTGVKVTSISPGMVD---------TAITAAYNP--SDRKKLDPQDIAEAVLYALTQPKHVNVNEITVRPV
2JAH Chain:A ((3-243))
-SALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLL-RSKGTVVQMSSIAGRVNVRNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHITHTATKEMYEQRISQIRKLQAQDIAEAVRYAVTAPHHATVHEIFIRP-
General information:
TITO was launched using:
RESULT:
Template:
2JAH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121307 for 1952 contacts (-62.1/contact) +
2D Compatibility (PS) -24901 + (NN) -9046 + (LL) 504
1D Compatibility (HY) -16000 + (ID) 4750
Total energy: -175500.0 ( -89.91 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_2JAH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JAH-query.scw
PDB file :
Tito_Scwrl_2JAH.pdb
: