Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNMNQTIMDAFHFRHATKQFDPQKKVSKEDFETILESGRLSPSSLGLEPWKFVVIQDQALRDELKAHSWGAAKQLDTASHFVLIFARK--NVTSRSPYVQHMLRDIKKYEAQTIPAVEQKFDAFQADFHISDNDQALYDWSSKQTYIALGNMMTTAALLGIDSCPMEGFSLDTVTDILANKGILDTEQFGLSVMVAFGYRQQDPPKNKTRQAYEDVIEWVGPKE
3QDL Chain:A ((16-210))
--------------RHSCKMFDSHYEFSSTELEEIAEIARLSPSSYNTQPWHFVMVTDKDLKKQIAAHSYFNEEMIKSASALMVVCSLRPSELLP---------------------------------------MQRLESYILEQCYIAVGQICMGVSLMGLDSCIIGGFDPLKVGEVLEER----INKPKIACLIALGKRVAEASQ-KSRKSKVDAITWL----
General information:
TITO was launched using:
RESULT:
Template:
3QDL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65645 for 1152 contacts (-57.0/contact) +
2D Compatibility (PS) -17524 + (NN) -4439 + (LL) 4132
1D Compatibility (HY) -14800 + (ID) 2500
Total energy: -100776.0 ( -87.48 by residue)
QMean score : 0.573
(partial model without unconserved sides chains):
PDB file :
Tito_3QDL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QDL-query.scw
PDB file :
Tito_Scwrl_3QDL.pdb
: