Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKSKRLEIVSTIVKKHKIYKKEQIISYIEEYF--------------GVRYSATTIAKDLKELNIYRV-PIDCETWIY----KAINNQTEQEMREKFRHYCEHEVLSSIINGSYIIVKTSPGFAQGINYFIDQLNIEEILGTVSGNDTTLILTASNDMAEYVYAKLFK
3LAJ Chain:A ((15-153))
--------------AANRAGRQARIVAILSSAQVRSQNELAALLAAEGIEVTQATLSRDLEELGAVKLRGADGGTGIYVVPE--VSGGTDRMAR-----LLGELLVSTDDSGNLAVLRTPPGAAHYLASAIDRAALPQVVGTIAGDDTILVVA---------------
General information:
TITO was launched using:
RESULT:
Template:
3LAJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31104 for 685 contacts (-45.4/contact) +
2D Compatibility (PS) -12462 + (NN) -3588 + (LL) 3592
1D Compatibility (HY) -5600 + (ID) 1350
Total energy: -50512.0 ( -73.74 by residue)
QMean score : 0.300
(partial model without unconserved sides chains):
PDB file :
Tito_3LAJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LAJ-query.scw
PDB file :
Tito_Scwrl_3LAJ.pdb
: