Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIELWPAIDLIGSTSVRLTEGKYDSEEKMSRSAEESIAYYSQFECVNRIHIVDLIGAKAQYAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGR-----IYLSVDAYG-EDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLV-KATTIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAHQASFWEGLE
5AHF Chain:A ((4-233))
-----PALNLIDGTVVRL-------QRDYGNDPLPRLQDYAA-QGAGVLHLVDLTGAKDPAKRQIPLIKTLVAGVNVPVQVGGGVRTEEDVAALLKAGVARVVIGSTAVKSPDVVKGWFERFGAQALVLALDVRIDEHGTKQVAVSGWQENSGVSLEQLVETYLPVGLKHVLCTDIS--------NVSLYEEVCARYPQIAFQSSGGIGDIDDIAALRGTGVRGVIVGRALLEGKF-----
General information:
TITO was launched using:
RESULT:
Template:
5AHF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113319 for 1579 contacts (-71.8/contact) +
2D Compatibility (PS) -22397 + (NN) -6990 + (LL) 1132
1D Compatibility (HY) -19200 + (ID) 2950
Total energy: -163724.0 ( -103.69 by residue)
QMean score : 0.506
(partial model without unconserved sides chains):
PDB file :
Tito_5AHF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5AHF-query.scw
PDB file :
Tito_Scwrl_5AHF.pdb
: