Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------MKKKFVSSCIASTILFGTLLGVTYKAEA-ATVHVA-------GGVWSHGIGKHYVWSYYSHNKRNHGSTAVGKYSSFSGVARPGV-QSKASAPKAWGGNKTFYSLH----
4DY5 Chain:A ((1-111))
TGKNVNVEFDKGQNSARYSGVIKGYDYDTYNFQARKGQKVHVSISNEGADTYLFGPGISDSVDLSRYSSELDGNGQYTLPA----SGKYELKVLQTRNEARK---NKAKKYSVNIQIK
General information:
TITO was launched using:
RESULT:
Template:
4DY5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23551 for 534 contacts (-44.1/contact) +
2D Compatibility (PS) -9870 + (NN) 1194 + (LL) 296
1D Compatibility (HY) -3200 + (ID) 1050
Total energy: -36181.0 ( -67.75 by residue)
QMean score : 0.127
(partial model without unconserved sides chains):
PDB file :
Tito_4DY5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DY5-query.scw
PDB file :
Tito_Scwrl_4DY5.pdb
: