Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKTLLLSLSASSLLNAEDNGFFISAGYQIGEAAQMVKNTGELKKLSDTYENLSNLLTNFNNLNQAVTNASSPSEINAAIDNLKANTQGLIGEKTNSPAYQAVYLALNAAVGLWNVIAYNVQCGPGNSGQQSVTFEGQPGHNSSSINCNLTGYNNGVSGPLSIENFKKLNQAYQTIQQALKQDSGFPVLDSAGKQVTITITTQTNGANKSETTTTTTTTNDAQTLLQEASKMISVLTTNCPWVNHNQGQNGGAPWGLDTAGNVCQVFATEFSAVTSMIKNAQEIVTQAQSLNQQNNQNAPQDFNPYTSADRAFAQNMLNHAQAQAKILELADQMKKDLNTIPSQFITNYLAACHNGGGTLPDAGVTNNTWGAGCAYVEETITALNNSLAHFGTQAEQIKQSELLARTILDFRGSLSNLNNTYNSITTTASNTPNSPFLKNLISQSTNPNNPGGLQAVYQVNQSAYSQLLSATQELGHNPFRRVGLISSQTNNGAMNGIGVQVGYKQFFGEKRRWGLRYYGFFDYNHAYIKSSFFNSASDVFTYGVGTDVLYNFINDKTTKNSKISFGVFGGIALAGTSWLNSQYVNLATFNNFYSAKMNVANFQFLFNLGLRMNLAKNKKKASDHAAQHGVELGVKIPTINTNYYSLLGTQLQYRRLYSVYLNYVFAY |
2LHF Chain:A ((36-148)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IDNTGTWGIRAGQQF--E--Q---GRYYATYENISDTSS----GNKLRQQNLLGSYDAFLPIGD--------NNTKLFGGATLGLVKLEQDGKG---------FKRDSDVGYAAGLQAGILQELS----------KNASIEGGYRYLRTNASTEMTPHGGNKLGSLDLHSSSQFYLG |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2LHF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -16984 for 674 contacts (-25.2/contact) +
2D Compatibility (PS) -11685 + (NN) -479 + (LL) 27228
1D Compatibility (HY) 2800 + (ID) 750
Total energy: 130.0 ( 0.19 by residue)
QMean score : 0.054
|
|
|